[nfbcs] Jaws and Cygwin

[Jim Barbour]

Are you sure you need to use the Sigwin terminal? You can probably get away with running a regular command window, and then running the program from there.

Jim

Sent from my iPhone

On Jan 16, 2013, at 12:44 PM, "Currin, Kevin" <kwcurrin at live.unc.edu> wrote:

> Hello,
> 
> First I would like to greet everyone since I am new to the list. My name is Kevin and I am an undergraduate biology major interested in programming.
> 
> Second, I apologize if this issue has been answered. I browsed through the prior cygwin-related postings, but couldn't find exactly what I was looking for.
> 
> I recently started doing research at a bioinformatics lab that analyzes RNA folding. In order to do my part of the research, I have to use a program called RNAfold. The lab PI suggested using cygwin to run the program. However, I ran into a few problems trying to use cygwin. When I open the cygwin terminal, I cannot get jaws (version 12) to read the output of what I type. The only way I can get such information is by pressing insert+b to read the whole window, or by selecting the entire window and pasting it into notepad. It doesn't even seem like the terminal is doing anything when I enter inputs (though I know it is doing something). Does anyone have any suggestions for anything I can do to start to get the terminal to behave more like an actual command line with jaws?
> 
> Thanks,
> 
> Kevin
> 
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